noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.6.1.4.5) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.6.1.4.5.2) Iterating over all combinations of grouping variables

(1.6.1.4.5.2.1) Grouping variables visit,Drug.Before.Diet

(1.6.1.4.5.2.2) Iterating over Abundance. profile sorting order

(1.6.1.4.5.2.2.1) Abundance. profile sorting order: average abundance

(1.6.1.4.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.4.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.6.1.4.5.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.1.1.0) Table 447. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.2.1.1.0-3235e48f2b3.1.6.1.4.5.2.2.2.1.1.csv

(1.6.1.4.5.2.2.2.1.1.1) Widget 458. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.2.1.1.1-32323070621Dynamic.Pivot.Table.html

(1.6.1.4.5.2.2.2.1.1.1) Widget 459. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.2.1.1.1-3237d62d2fcDynamic.Pivot.Table.html

(1.6.1.4.5.2.2.2.1.1.1) Table 448. Summary table. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.2.1.1.1-323701d8a5d.1.6.1.4.5.2.2.2.1.1.csv

(1.6.1.4.5.2.2.2.1.1.1) Figure 1030. Abundance. Data grouped by visit,Drug.Before.Diet. bar_stacked plot. Image file: plots/32373dc6968.svg.

(1.6.1.4.5.2.2.2.1.1.1) Figure 1031. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32326efc54c.svg.

(1.6.1.4.5.2.2.2.1.1.1) Figure 1032. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32332162d68.svg.

(1.6.1.4.5.2.2.2.1.1.1) Figure 1033. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32374065c71.svg.

(1.6.1.4.5.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.1.2.1) Figure 1034. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/3235569f09d.svg.

(1.6.1.4.5.2.2.2.1.2.1) Figure 1035. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/323657dc599.svg.

(1.6.1.4.5.2.2.2.1.2.1) Figure 1036. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32344d59256.svg.

(1.6.1.4.5.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling

(1.6.1.4.5.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.2.1.1) Figure 1037. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32336f9e5e2.svg.

(1.6.1.4.5.2.2.2.2.1.1) Figure 1038. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/323ae61dfe.svg.

(1.6.1.4.5.2.2.2.2.1.1) Figure 1039. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32323269323.svg.

(1.6.1.4.5.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.2.2.1) Figure 1040. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323526cc868.svg.

(1.6.1.4.5.2.2.2.2.2.1) Figure 1041. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32323dcd9e6.svg.

(1.6.1.4.5.2.2.2.2.2.1) Figure 1042. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/3239a91211.svg.

(1.6.1.4.5.2.2.3) Abundance. profile sorting order: Ranking by 'stabsel' method

(1.6.1.4.5.2.2.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.4.5.2.2.4.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.6.1.4.5.2.2.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.1.1.0) Table 449. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.4.1.1.0-32369d53e47.1.6.1.4.5.2.2.4.1.1.csv

(1.6.1.4.5.2.2.4.1.1.1) Widget 460. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.4.1.1.1-32349845d36Dynamic.Pivot.Table.html

(1.6.1.4.5.2.2.4.1.1.1) Widget 461. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.4.1.1.1-3231fbdb1a0Dynamic.Pivot.Table.html

(1.6.1.4.5.2.2.4.1.1.1) Table 450. Summary table. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.4.1.1.1-3232d46795f.1.6.1.4.5.2.2.4.1.1.csv

(1.6.1.4.5.2.2.4.1.1.1) Figure 1043. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/3234c9f2c5b.svg.

(1.6.1.4.5.2.2.4.1.1.1) Figure 1044. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32322d6f6c0.svg.

(1.6.1.4.5.2.2.4.1.1.1) Figure 1045. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/323223d2a3.svg.

(1.6.1.4.5.2.2.4.1.1.1) Figure 1046. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32393cecac.svg.

(1.6.1.4.5.2.2.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.1.2.1) Figure 1047. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32333e17237.svg.

(1.6.1.4.5.2.2.4.1.2.1) Figure 1048. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32359b2b4bc.svg.

(1.6.1.4.5.2.2.4.1.2.1) Figure 1049. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323c8356fe.svg.

(1.6.1.4.5.2.2.4.2) dodged plots. Iterating over orientation and, optionally, scaling

(1.6.1.4.5.2.2.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.2.1.1) Figure 1050. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3233c0076a9.svg.

(1.6.1.4.5.2.2.4.2.1.1) Figure 1051. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32352dd1d7a.svg.

(1.6.1.4.5.2.2.4.2.1.1) Figure 1052. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3236bea33da.svg.

(1.6.1.4.5.2.2.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.2.2.1) Figure 1053. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323131470d3.svg.

(1.6.1.4.5.2.2.4.2.2.1) Figure 1054. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233a46db12.svg.

(1.6.1.4.5.2.2.4.2.2.1) Figure 1055. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323336d5161.svg.

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