noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.6.1.4.5) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.6.1.4.5.2) Iterating over all combinations of grouping variables
(1.6.1.4.5.2.1) Grouping variables visit,Drug.Before.Diet
(1.6.1.4.5.2.2) Iterating over Abundance. profile sorting order
(1.6.1.4.5.2.2.1) Abundance. profile sorting order: average abundance
(1.6.1.4.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.4.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.6.1.4.5.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.1.1.0) Table 447. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.2.1.1.0-3235e48f2b3.1.6.1.4.5.2.2.2.1.1.csv

.record.id visit Drug.Before.Diet feature Abundance
SM1 1 DrugBefore_YES Bacteroides.Otu0001 3.325e-02
SM10 3 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM100 4 DrugBefore_YES Bacteroides.Otu0001 7.692e-05
SM11 2 DrugBefore_YES Bacteroides.Otu0001 2.280e-01
SM12 1 DrugBefore_YES Bacteroides.Otu0001 2.363e-01
SM13 1 DrugBefore_NO Bacteroides.Otu0001 2.143e-02
SM14 1 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM16 4 DrugBefore_NO Bacteroides.Otu0001 3.835e-02
SM17 1 DrugBefore_YES Bacteroides.Otu0001 1.738e-01
SM18 2 DrugBefore_NO Bacteroides.Otu0001 1.343e-03
SM19 2 DrugBefore_NO Bacteroides.Otu0001 3.656e-02
SM2 1 DrugBefore_NO Bacteroides.Otu0001 7.129e-03
SM21 1 DrugBefore_NO Bacteroides.Otu0001 9.063e-02
SM22 1 DrugBefore_YES Bacteroides.Otu0001 1.800e-01
SM23 2 DrugBefore_YES Bacteroides.Otu0001 2.207e-01
SM24 1 DrugBefore_NO Bacteroides.Otu0001 6.084e-02
SM25 4 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM29 3 DrugBefore_YES Bacteroides.Otu0001 1.015e-01
SM3 2 DrugBefore_YES Bacteroides.Otu0001 5.679e-02
SM30 4 DrugBefore_YES Bacteroides.Otu0001 4.615e-02
SM33 1 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM36 4 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM38 2 DrugBefore_YES Bacteroides.Otu0001 2.849e-01
SM39 1 DrugBefore_NO Bacteroides.Otu0001 1.512e-01
SM40 4 DrugBefore_NO Bacteroides.Otu0001 1.767e-02
SM41 1 DrugBefore_YES Bacteroides.Otu0001 4.380e-02
SM42 4 DrugBefore_NO Bacteroides.Otu0001 2.641e-01
SM43 4 DrugBefore_YES Bacteroides.Otu0001 1.241e-01
SM45 2 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM49 1 DrugBefore_YES Bacteroides.Otu0001 1.179e-01
SM5 3 DrugBefore_YES Bacteroides.Otu0001 2.741e-01
SM50 3 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM51 4 DrugBefore_YES Bacteroides.Otu0001 2.826e-01
SM52 1 DrugBefore_NO Bacteroides.Otu0001 5.829e-02
SM53 2 DrugBefore_YES Bacteroides.Otu0001 2.368e-01
SM54 3 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM56 2 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM57 1 DrugBefore_YES Bacteroides.Otu0001 1.037e-01
SM58 2 DrugBefore_NO Bacteroides.Otu0001 1.620e-04
SM59 3 DrugBefore_NO Bacteroides.Otu0001 3.745e-03
SM60 3 DrugBefore_YES Bacteroides.Otu0001 2.447e-01
SM62 1 DrugBefore_YES Bacteroides.Otu0001 5.347e-01
SM64 2 DrugBefore_YES Bacteroides.Otu0001 3.508e-01
SM65 3 DrugBefore_YES Bacteroides.Otu0001 8.092e-02
SM67 4 DrugBefore_YES Bacteroides.Otu0001 2.186e-01
SM68 4 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM69 4 DrugBefore_YES Bacteroides.Otu0001 1.655e-01
SM71 3 DrugBefore_YES Bacteroides.Otu0001 2.788e-01
SM73 1 DrugBefore_NO Bacteroides.Otu0001 1.891e-01
SM75 3 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM77 2 DrugBefore_YES Bacteroides.Otu0001 2.034e-01
SM79 2 DrugBefore_NO Bacteroides.Otu0001 2.642e-02
SM8 1 DrugBefore_NO Bacteroides.Otu0001 5.265e-02
SM82 4 DrugBefore_YES Bacteroides.Otu0001 1.052e-02
SM83 1 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM84 1 DrugBefore_YES Bacteroides.Otu0001 1.247e-01
SM86 2 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM87 1 DrugBefore_YES Bacteroides.Otu0001 1.941e-01
SM88 2 DrugBefore_YES Bacteroides.Otu0001 2.302e-02
SM9 2 DrugBefore_NO Bacteroides.Otu0001 3.497e-02
SM90 2 DrugBefore_NO Bacteroides.Otu0001 3.713e-02
SM91 3 DrugBefore_YES Bacteroides.Otu0001 1.254e-01
SM92 3 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM93 1 DrugBefore_YES Bacteroides.Otu0001 3.120e-01
SM96 1 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM98 3 DrugBefore_NO Bacteroides.Otu0001 3.648e-02
SM99 3 DrugBefore_NO Bacteroides.Otu0001 4.305e-02
SM1 1 DrugBefore_YES Bacteroides.Otu2520 1.003e-01
SM10 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM100 4 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM11 2 DrugBefore_YES Bacteroides.Otu2520 1.344e-01
SM12 1 DrugBefore_YES Bacteroides.Otu2520 1.504e-01
SM13 1 DrugBefore_NO Bacteroides.Otu2520 1.473e-02
SM14 1 DrugBefore_NO Bacteroides.Otu2520 3.786e-04
SM16 4 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM17 1 DrugBefore_YES Bacteroides.Otu2520 1.862e-02
SM18 2 DrugBefore_NO Bacteroides.Otu2520 1.074e-02
SM19 2 DrugBefore_NO Bacteroides.Otu2520 9.255e-04
SM2 1 DrugBefore_NO Bacteroides.Otu2520 1.638e-01
SM21 1 DrugBefore_NO Bacteroides.Otu2520 4.540e-03
SM22 1 DrugBefore_YES Bacteroides.Otu2520 2.610e-02
SM23 2 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM24 1 DrugBefore_NO Bacteroides.Otu2520 5.531e-03
SM25 4 DrugBefore_NO Bacteroides.Otu2520 3.053e-01
SM29 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM3 2 DrugBefore_YES Bacteroides.Otu2520 5.657e-04
SM30 4 DrugBefore_YES Bacteroides.Otu2520 3.250e-04
SM33 1 DrugBefore_YES Bacteroides.Otu2520 7.120e-02
SM36 4 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM38 2 DrugBefore_YES Bacteroides.Otu2520 9.696e-02
SM39 1 DrugBefore_NO Bacteroides.Otu2520 8.620e-03
SM40 4 DrugBefore_NO Bacteroides.Otu2520 5.920e-02
SM41 1 DrugBefore_YES Bacteroides.Otu2520 1.440e-01
SM42 4 DrugBefore_NO Bacteroides.Otu2520 1.665e-04
SM43 4 DrugBefore_YES Bacteroides.Otu2520 3.957e-02
SM45 2 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM49 1 DrugBefore_YES Bacteroides.Otu2520 1.715e-01
SM5 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM50 3 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM51 4 DrugBefore_YES Bacteroides.Otu2520 3.368e-02
SM52 1 DrugBefore_NO Bacteroides.Otu2520 2.179e-04
SM53 2 DrugBefore_YES Bacteroides.Otu2520 7.192e-05
SM54 3 DrugBefore_YES Bacteroides.Otu2520 2.426e-01
SM56 2 DrugBefore_YES Bacteroides.Otu2520 9.465e-03
SM57 1 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM58 2 DrugBefore_NO Bacteroides.Otu2520 3.239e-04
SM59 3 DrugBefore_NO Bacteroides.Otu2520 2.996e-03
SM60 3 DrugBefore_YES Bacteroides.Otu2520 5.548e-02
SM62 1 DrugBefore_YES Bacteroides.Otu2520 1.525e-02
SM64 2 DrugBefore_YES Bacteroides.Otu2520 9.297e-03
SM65 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM67 4 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM68 4 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM69 4 DrugBefore_YES Bacteroides.Otu2520 1.197e-02
SM71 3 DrugBefore_YES Bacteroides.Otu2520 2.162e-02
SM73 1 DrugBefore_NO Bacteroides.Otu2520 5.047e-04
SM75 3 DrugBefore_NO Bacteroides.Otu2520 2.037e-03
SM77 2 DrugBefore_YES Bacteroides.Otu2520 8.359e-02
SM79 2 DrugBefore_NO Bacteroides.Otu2520 1.576e-02
SM8 1 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM82 4 DrugBefore_YES Bacteroides.Otu2520 3.568e-01
SM83 1 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM84 1 DrugBefore_YES Bacteroides.Otu2520 2.912e-03
SM86 2 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM87 1 DrugBefore_YES Bacteroides.Otu2520 4.566e-02
SM88 2 DrugBefore_YES Bacteroides.Otu2520 1.604e-01
SM9 2 DrugBefore_NO Bacteroides.Otu2520 5.636e-02
SM90 2 DrugBefore_NO Bacteroides.Otu2520 2.558e-02
SM91 3 DrugBefore_YES Bacteroides.Otu2520 8.567e-02
SM92 3 DrugBefore_NO Bacteroides.Otu2520 9.504e-03
SM93 1 DrugBefore_YES Bacteroides.Otu2520 4.034e-04
SM96 1 DrugBefore_NO Bacteroides.Otu2520 4.602e-01
SM98 3 DrugBefore_NO Bacteroides.Otu2520 9.832e-04
SM99 3 DrugBefore_NO Bacteroides.Otu2520 4.757e-04
SM1 1 DrugBefore_YES Bacteroides.Otu0848 5.888e-03
SM10 3 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM100 4 DrugBefore_YES Bacteroides.Otu0848 1.538e-04
SM11 2 DrugBefore_YES Bacteroides.Otu0848 1.642e-02
SM12 1 DrugBefore_YES Bacteroides.Otu0848 1.120e-02
SM13 1 DrugBefore_NO Bacteroides.Otu0848 8.929e-03
SM14 1 DrugBefore_NO Bacteroides.Otu0848 3.786e-04
SM16 4 DrugBefore_NO Bacteroides.Otu0848 4.875e-04
SM17 1 DrugBefore_YES Bacteroides.Otu0848 3.682e-02
SM18 2 DrugBefore_NO Bacteroides.Otu0848 6.715e-04
SM19 2 DrugBefore_NO Bacteroides.Otu0848 2.360e-02
SM2 1 DrugBefore_NO Bacteroides.Otu0848 8.741e-03
SM21 1 DrugBefore_NO Bacteroides.Otu0848 6.558e-03
SM22 1 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM23 2 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM24 1 DrugBefore_NO Bacteroides.Otu0848 2.958e-03
SM25 4 DrugBefore_NO Bacteroides.Otu0848 8.319e-04
SM29 3 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM3 2 DrugBefore_YES Bacteroides.Otu0848 3.779e-02
SM30 4 DrugBefore_YES Bacteroides.Otu0848 2.275e-03
SM33 1 DrugBefore_YES Bacteroides.Otu0848 5.901e-03
SM36 4 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM38 2 DrugBefore_YES Bacteroides.Otu0848 7.790e-02
SM39 1 DrugBefore_NO Bacteroides.Otu0848 5.281e-03
SM40 4 DrugBefore_NO Bacteroides.Otu0848 1.387e-03
SM41 1 DrugBefore_YES Bacteroides.Otu0848 5.539e-02
SM42 4 DrugBefore_NO Bacteroides.Otu0848 8.323e-05
SM43 4 DrugBefore_YES Bacteroides.Otu0848 2.010e-01
SM45 2 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM49 1 DrugBefore_YES Bacteroides.Otu0848 1.082e-01
SM5 3 DrugBefore_YES Bacteroides.Otu0848 8.476e-05
SM50 3 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM51 4 DrugBefore_YES Bacteroides.Otu0848 4.751e-02
SM52 1 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM53 2 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM54 3 DrugBefore_YES Bacteroides.Otu0848 1.414e-02
SM56 2 DrugBefore_YES Bacteroides.Otu0848 6.527e-04
SM57 1 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM58 2 DrugBefore_NO Bacteroides.Otu0848 8.098e-04
SM59 3 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM60 3 DrugBefore_YES Bacteroides.Otu0848 2.444e-01
SM62 1 DrugBefore_YES Bacteroides.Otu0848 5.058e-02
SM64 2 DrugBefore_YES Bacteroides.Otu0848 2.060e-03
SM65 3 DrugBefore_YES Bacteroides.Otu0848 1.181e-01
SM67 4 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM68 4 DrugBefore_NO Bacteroides.Otu0848 8.725e-02
SM69 4 DrugBefore_YES Bacteroides.Otu0848 6.310e-02
SM71 3 DrugBefore_YES Bacteroides.Otu0848 1.770e-02
SM73 1 DrugBefore_NO Bacteroides.Otu0848 1.918e-03
SM75 3 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM77 2 DrugBefore_YES Bacteroides.Otu0848 6.449e-02
SM79 2 DrugBefore_NO Bacteroides.Otu0848 3.034e-03
SM8 1 DrugBefore_NO Bacteroides.Otu0848 1.294e-01
SM82 4 DrugBefore_YES Bacteroides.Otu0848 2.948e-02
SM83 1 DrugBefore_YES Bacteroides.Otu0848 2.746e-04
SM84 1 DrugBefore_YES Bacteroides.Otu0848 8.057e-03
SM86 2 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM87 1 DrugBefore_YES Bacteroides.Otu0848 1.750e-02
SM88 2 DrugBefore_YES Bacteroides.Otu0848 3.666e-03
SM9 2 DrugBefore_NO Bacteroides.Otu0848 2.057e-03
SM90 2 DrugBefore_NO Bacteroides.Otu0848 1.815e-02
SM91 3 DrugBefore_YES Bacteroides.Otu0848 8.972e-02
SM92 3 DrugBefore_NO Bacteroides.Otu0848 4.849e-01
SM93 1 DrugBefore_YES Bacteroides.Otu0848 4.734e-02
SM96 1 DrugBefore_NO Bacteroides.Otu0848 6.533e-03
SM98 3 DrugBefore_NO Bacteroides.Otu0848 3.933e-04

(1.6.1.4.5.2.2.2.1.1.1) Widget 458. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.2.1.1.1-32323070621Dynamic.Pivot.Table.html

(1.6.1.4.5.2.2.2.1.1.1) Widget 459. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.2.1.1.1-3237d62d2fcDynamic.Pivot.Table.html

(1.6.1.4.5.2.2.2.1.1.1) Table 448. Summary table. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.2.1.1.1-323701d8a5d.1.6.1.4.5.2.2.2.1.1.csv

feature visit Drug.Before.Diet mean sd median incidence
Bacteroides.Otu0001 1 DrugBefore_NO 6.313e-02 6.443e-02 5.547e-02 0.8000
Bacteroides.Otu0001 1 DrugBefore_YES 1.580e-01 1.466e-01 1.247e-01 0.8462
Bacteroides.Otu0001 2 DrugBefore_NO 1.951e-02 1.813e-02 2.642e-02 0.8571
Bacteroides.Otu0001 2 DrugBefore_YES 1.604e-01 1.285e-01 2.120e-01 0.8000
Bacteroides.Otu0001 3 DrugBefore_NO 1.388e-02 2.021e-02 1.873e-03 0.5000
Bacteroides.Otu0001 3 DrugBefore_YES 1.382e-01 1.150e-01 1.135e-01 0.7500
Bacteroides.Otu0001 4 DrugBefore_NO 5.335e-02 1.044e-01 8.834e-03 0.5000
Bacteroides.Otu0001 4 DrugBefore_YES 1.211e-01 1.081e-01 1.241e-01 1.0000
Bacteroides.Otu2520 1 DrugBefore_NO 6.585e-02 1.474e-01 5.035e-03 0.9000
Bacteroides.Otu2520 1 DrugBefore_YES 5.741e-02 6.351e-02 2.610e-02 0.8462
Bacteroides.Otu2520 2 DrugBefore_NO 1.567e-02 2.031e-02 1.074e-02 0.8571
Bacteroides.Otu2520 2 DrugBefore_YES 4.947e-02 6.314e-02 9.381e-03 0.8000
Bacteroides.Otu2520 3 DrugBefore_NO 2.666e-03 3.521e-03 1.510e-03 0.8333
Bacteroides.Otu2520 3 DrugBefore_YES 5.067e-02 8.384e-02 1.081e-02 0.5000
Bacteroides.Otu2520 4 DrugBefore_NO 6.078e-02 1.221e-01 8.323e-05 0.5000
Bacteroides.Otu2520 4 DrugBefore_YES 6.319e-02 1.305e-01 1.197e-02 0.7143
Bacteroides.Otu0848 1 DrugBefore_NO 1.707e-02 3.960e-02 5.907e-03 0.9000
Bacteroides.Otu0848 1 DrugBefore_YES 2.671e-02 3.193e-02 1.120e-02 0.8462
Bacteroides.Otu0848 2 DrugBefore_NO 6.903e-03 9.725e-03 2.057e-03 0.8571
Bacteroides.Otu0848 2 DrugBefore_YES 2.030e-02 2.948e-02 2.863e-03 0.7000
Bacteroides.Otu0848 3 DrugBefore_NO 9.123e-02 1.945e-01 1.966e-04 0.5000
Bacteroides.Otu0848 3 DrugBefore_YES 6.052e-02 8.697e-02 1.592e-02 0.7500
Bacteroides.Otu0848 4 DrugBefore_NO 1.501e-02 3.540e-02 6.597e-04 0.8333
Bacteroides.Otu0848 4 DrugBefore_YES 4.907e-02 7.147e-02 2.948e-02 0.8571
Faecalibacterium.Otu0067 1 DrugBefore_NO 2.447e-02 2.587e-02 1.503e-02 1.0000
Faecalibacterium.Otu0067 1 DrugBefore_YES 1.246e-02 1.071e-02 6.632e-03 0.9231
Faecalibacterium.Otu0067 2 DrugBefore_NO 5.462e-02 1.055e-01 1.279e-02 0.8571
Faecalibacterium.Otu0067 2 DrugBefore_YES 3.949e-02 8.710e-02 7.349e-03 0.9000
Faecalibacterium.Otu0067 3 DrugBefore_NO 1.630e-02 1.924e-02 6.763e-03 0.8333
Faecalibacterium.Otu0067 3 DrugBefore_YES 2.944e-02 3.510e-02 1.759e-02 1.0000
Faecalibacterium.Otu0067 4 DrugBefore_NO 7.234e-02 7.795e-02 4.539e-02 1.0000
Faecalibacterium.Otu0067 4 DrugBefore_YES 2.888e-02 3.115e-02 1.202e-02 1.0000
Bacteroides.Otu2038 1 DrugBefore_NO 3.474e-02 8.766e-02 2.137e-03 0.9000
Bacteroides.Otu2038 1 DrugBefore_YES 1.968e-02 4.234e-02 6.590e-03 0.8462
Bacteroides.Otu2038 2 DrugBefore_NO 6.335e-03 1.328e-02 4.859e-04 0.7143
Bacteroides.Otu2038 2 DrugBefore_YES 2.811e-02 5.453e-02 7.947e-03 0.8000
Bacteroides.Otu2038 3 DrugBefore_NO 5.785e-02 1.371e-01 2.261e-03 0.5000
Bacteroides.Otu2038 3 DrugBefore_YES 8.787e-03 9.306e-03 7.237e-03 0.7500
Bacteroides.Otu2038 4 DrugBefore_NO 7.519e-02 1.129e-01 2.006e-02 0.5000
Bacteroides.Otu2038 4 DrugBefore_YES 1.065e-02 1.773e-02 1.341e-03 0.8571
Parabacteroides.Otu1736 1 DrugBefore_NO 3.866e-03 6.134e-03 1.455e-04 0.6000
Parabacteroides.Otu1736 1 DrugBefore_YES 4.142e-02 1.317e-01 1.328e-04 0.5385
Parabacteroides.Otu1736 2 DrugBefore_NO 1.770e-02 4.604e-02 4.893e-04 0.5714
Parabacteroides.Otu1736 2 DrugBefore_YES 7.001e-02 2.108e-01 0.000e+00 0.4000
Parabacteroides.Otu1736 3 DrugBefore_NO 7.007e-03 1.493e-02 0.000e+00 0.3333
Parabacteroides.Otu1736 3 DrugBefore_YES 3.964e-02 6.146e-02 6.241e-03 0.6250
Parabacteroides.Otu1736 4 DrugBefore_NO 6.321e-04 1.017e-03 0.000e+00 0.3333
Parabacteroides.Otu1736 4 DrugBefore_YES 1.770e-03 3.510e-03 0.000e+00 0.4286
Prevotella.Otu1987 1 DrugBefore_NO 5.770e-02 1.480e-01 0.000e+00 0.4000
Prevotella.Otu1987 1 DrugBefore_YES 1.090e-02 2.911e-02 0.000e+00 0.1538
Prevotella.Otu1987 2 DrugBefore_NO 4.991e-02 1.044e-01 0.000e+00 0.4286
Prevotella.Otu1987 2 DrugBefore_YES 1.933e-02 5.966e-02 1.932e-05 0.5000
Prevotella.Otu1987 3 DrugBefore_NO 4.009e-02 9.820e-02 0.000e+00 0.1667
Prevotella.Otu1987 3 DrugBefore_YES 2.731e-03 7.630e-03 0.000e+00 0.2500
Prevotella.Otu1987 4 DrugBefore_NO 1.542e-05 3.776e-05 0.000e+00 0.1667
Prevotella.Otu1987 4 DrugBefore_YES 6.413e-05 1.136e-04 0.000e+00 0.4286
Bacteroides.Otu2654 1 DrugBefore_NO 7.257e-02 1.423e-01 2.235e-03 0.7000
Bacteroides.Otu2654 1 DrugBefore_YES 2.880e-02 3.291e-02 1.159e-02 0.8462
Bacteroides.Otu2654 2 DrugBefore_NO 1.413e-03 1.664e-03 8.251e-04 0.7143
Bacteroides.Otu2654 2 DrugBefore_YES 9.244e-03 1.863e-02 1.462e-03 0.6000
Bacteroides.Otu2654 3 DrugBefore_NO 1.527e-03 2.490e-03 2.610e-04 0.6667
Bacteroides.Otu2654 3 DrugBefore_YES 1.201e-02 2.697e-02 4.610e-04 0.7500
Bacteroides.Otu2654 4 DrugBefore_NO 3.480e-03 7.820e-03 3.116e-04 0.5000
Bacteroides.Otu2654 4 DrugBefore_YES 1.339e-02 1.949e-02 4.248e-03 1.0000
Bacteroides.Otu2065 1 DrugBefore_NO 2.137e-04 5.675e-04 0.000e+00 0.2000
Bacteroides.Otu2065 1 DrugBefore_YES 3.720e-02 1.082e-01 0.000e+00 0.2308
Bacteroides.Otu2065 2 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2065 2 DrugBefore_YES 1.184e-02 3.571e-02 0.000e+00 0.4000
Bacteroides.Otu2065 3 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2065 3 DrugBefore_YES 6.869e-02 1.851e-01 0.000e+00 0.3750
Bacteroides.Otu2065 4 DrugBefore_NO 1.135e-02 2.779e-02 0.000e+00 0.1667
Bacteroides.Otu2065 4 DrugBefore_YES 2.219e-02 3.637e-02 1.625e-04 0.5714
Bacteroides.Otu0863 1 DrugBefore_NO 4.444e-02 7.340e-02 2.085e-02 0.9000
Bacteroides.Otu0863 1 DrugBefore_YES 2.294e-02 4.344e-02 3.300e-03 0.8462
Bacteroides.Otu0863 2 DrugBefore_NO 5.955e-03 1.395e-02 5.036e-04 0.7143
Bacteroides.Otu0863 2 DrugBefore_YES 1.605e-02 4.328e-02 1.028e-04 0.5000
Bacteroides.Otu0863 3 DrugBefore_NO 2.915e-03 4.516e-03 0.000e+00 0.3333
Bacteroides.Otu0863 3 DrugBefore_YES 6.975e-03 9.227e-03 3.995e-03 0.7500
Bacteroides.Otu0863 4 DrugBefore_NO 2.470e-03 5.525e-03 0.000e+00 0.3333
Bacteroides.Otu0863 4 DrugBefore_YES 2.140e-02 3.827e-02 4.546e-03 0.8571
Bacteroides.Otu0929 1 DrugBefore_NO 1.419e-02 2.249e-02 3.571e-03 0.7000
Bacteroides.Otu0929 1 DrugBefore_YES 2.972e-02 6.220e-02 3.724e-03 0.7692
Bacteroides.Otu0929 2 DrugBefore_NO 5.678e-03 6.433e-03 4.197e-03 0.5714
Bacteroides.Otu0929 2 DrugBefore_YES 2.250e-02 2.533e-02 1.586e-02 0.8000
Bacteroides.Otu0929 3 DrugBefore_NO 2.064e-03 4.875e-03 0.000e+00 0.3333
Bacteroides.Otu0929 3 DrugBefore_YES 2.530e-02 2.588e-02 2.134e-02 0.8750
Bacteroides.Otu0929 4 DrugBefore_NO 6.298e-03 9.798e-03 0.000e+00 0.3333
Bacteroides.Otu0929 4 DrugBefore_YES 1.556e-02 1.545e-02 1.297e-02 0.8571
Bacteroides.Otu2431 1 DrugBefore_NO 1.081e-02 1.187e-02 4.203e-03 0.8000
Bacteroides.Otu2431 1 DrugBefore_YES 1.916e-02 2.943e-02 1.437e-02 0.8462
Bacteroides.Otu2431 2 DrugBefore_NO 1.465e-02 2.101e-02 6.715e-04 0.7143
Bacteroides.Otu2431 2 DrugBefore_YES 1.612e-02 1.948e-02 8.648e-03 0.8000
Bacteroides.Otu2431 3 DrugBefore_NO 1.118e-03 2.044e-03 4.916e-05 0.5000
Bacteroides.Otu2431 3 DrugBefore_YES 1.666e-02 1.369e-02 1.653e-02 1.0000
Bacteroides.Otu2431 4 DrugBefore_NO 3.160e-02 4.926e-02 4.451e-03 0.6667
Bacteroides.Otu2431 4 DrugBefore_YES 2.214e-02 2.310e-02 1.294e-02 0.8571
Bacteroides.Otu0786 1 DrugBefore_NO 3.901e-03 7.552e-03 6.537e-04 0.5000
Bacteroides.Otu0786 1 DrugBefore_YES 2.109e-02 6.921e-02 0.000e+00 0.4615
Bacteroides.Otu0786 2 DrugBefore_NO 5.539e-02 1.216e-01 8.663e-03 0.7143
Bacteroides.Otu0786 2 DrugBefore_YES 3.762e-03 9.941e-03 0.000e+00 0.3000
Bacteroides.Otu0786 3 DrugBefore_NO 1.427e-02 3.351e-02 0.000e+00 0.3333
Bacteroides.Otu0786 3 DrugBefore_YES 9.254e-03 1.752e-02 0.000e+00 0.3750
Bacteroides.Otu0786 4 DrugBefore_NO 4.070e-03 9.969e-03 0.000e+00 0.1667
Bacteroides.Otu0786 4 DrugBefore_YES 2.042e-02 4.935e-02 0.000e+00 0.4286
Lactobacillus.Otu1332 1 DrugBefore_NO 1.529e-04 2.881e-04 0.000e+00 0.3000
Lactobacillus.Otu1332 1 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Lactobacillus.Otu1332 2 DrugBefore_NO 1.424e-01 3.769e-01 0.000e+00 0.1429
Lactobacillus.Otu1332 2 DrugBefore_YES 5.567e-06 1.761e-05 0.000e+00 0.1000
Lactobacillus.Otu1332 3 DrugBefore_NO 8.800e-04 1.909e-03 0.000e+00 0.3333
Lactobacillus.Otu1332 3 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Lactobacillus.Otu1332 4 DrugBefore_NO 5.364e-05 1.314e-04 0.000e+00 0.1667
Lactobacillus.Otu1332 4 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu1201 1 DrugBefore_NO 9.266e-03 1.027e-02 6.962e-03 0.9000
Bacteroides.Otu1201 1 DrugBefore_YES 2.465e-02 5.589e-02 4.831e-03 0.7692
Bacteroides.Otu1201 2 DrugBefore_NO 1.400e-03 2.361e-03 0.000e+00 0.4286
Bacteroides.Otu1201 2 DrugBefore_YES 4.627e-03 6.232e-03 1.186e-03 0.8000
Bacteroides.Otu1201 3 DrugBefore_NO 1.982e-05 4.855e-05 0.000e+00 0.1667
Bacteroides.Otu1201 3 DrugBefore_YES 1.252e-02 2.175e-02 1.190e-03 0.6250
Bacteroides.Otu1201 4 DrugBefore_NO 2.775e-04 6.797e-04 0.000e+00 0.1667
Bacteroides.Otu1201 4 DrugBefore_YES 6.109e-02 1.443e-01 4.281e-04 0.7143
Bacteroides.Otu2625 1 DrugBefore_NO 1.130e-02 3.301e-02 3.196e-04 0.6000
Bacteroides.Otu2625 1 DrugBefore_YES 2.583e-02 5.292e-02 1.212e-03 0.6923
Bacteroides.Otu2625 2 DrugBefore_NO 4.114e-03 1.088e-02 0.000e+00 0.1429
Bacteroides.Otu2625 2 DrugBefore_YES 7.327e-03 1.297e-02 1.092e-03 0.7000
Bacteroides.Otu2625 3 DrugBefore_NO 1.035e-03 1.676e-03 1.189e-04 0.5000
Bacteroides.Otu2625 3 DrugBefore_YES 3.090e-02 8.438e-02 0.000e+00 0.3750
Bacteroides.Otu2625 4 DrugBefore_NO 1.065e-02 2.457e-02 0.000e+00 0.3333
Bacteroides.Otu2625 4 DrugBefore_YES 2.022e-03 3.918e-03 3.058e-05 0.5714
Bacteroides.Otu2765 1 DrugBefore_NO 8.715e-03 1.598e-02 3.269e-03 1.0000
Bacteroides.Otu2765 1 DrugBefore_YES 1.573e-02 1.817e-02 8.930e-03 0.8462
Bacteroides.Otu2765 2 DrugBefore_NO 4.854e-03 7.881e-03 1.847e-03 0.7143
Bacteroides.Otu2765 2 DrugBefore_YES 1.146e-02 1.561e-02 1.476e-03 0.7000
Bacteroides.Otu2765 3 DrugBefore_NO 2.370e-02 3.857e-02 3.195e-04 0.5000
Bacteroides.Otu2765 3 DrugBefore_YES 1.522e-02 2.014e-02 8.160e-03 0.6250
Bacteroides.Otu2765 4 DrugBefore_NO 4.644e-03 1.086e-02 1.625e-04 0.5000
Bacteroides.Otu2765 4 DrugBefore_YES 1.799e-02 2.200e-02 1.192e-02 1.0000
Bacteroides.Otu0069 1 DrugBefore_NO 6.064e-03 6.818e-03 3.453e-03 0.8000
Bacteroides.Otu0069 1 DrugBefore_YES 2.030e-02 1.993e-02 1.628e-02 0.8462
Bacteroides.Otu0069 2 DrugBefore_NO 2.499e-03 2.575e-03 2.879e-03 0.7143
Bacteroides.Otu0069 2 DrugBefore_YES 2.071e-02 1.572e-02 2.446e-02 0.8000
Bacteroides.Otu0069 3 DrugBefore_NO 9.949e-04 1.568e-03 3.745e-04 0.5000
Bacteroides.Otu0069 3 DrugBefore_YES 1.868e-02 1.841e-02 1.250e-02 0.7500
Bacteroides.Otu0069 4 DrugBefore_NO 3.397e-03 7.176e-03 3.250e-04 0.5000
Bacteroides.Otu0069 4 DrugBefore_YES 1.377e-02 1.356e-02 1.364e-02 0.8571
Clostridium_XI.Otu1804 1 DrugBefore_NO 2.111e-02 3.509e-02 3.397e-03 0.9000
Clostridium_XI.Otu1804 1 DrugBefore_YES 4.942e-03 1.055e-02 1.655e-03 0.7692
Clostridium_XI.Otu1804 2 DrugBefore_NO 3.633e-03 5.261e-03 2.854e-03 0.5714
Clostridium_XI.Otu1804 2 DrugBefore_YES 1.619e-02 4.365e-02 9.337e-04 0.9000
Clostridium_XI.Otu1804 3 DrugBefore_NO 3.741e-03 4.719e-03 2.250e-03 0.8333
Clostridium_XI.Otu1804 3 DrugBefore_YES 7.790e-03 1.040e-02 1.934e-03 1.0000
Clostridium_XI.Otu1804 4 DrugBefore_NO 2.675e-02 4.629e-02 7.207e-03 1.0000
Clostridium_XI.Otu1804 4 DrugBefore_YES 1.497e-02 1.884e-02 4.832e-03 1.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 1 DrugBefore_NO 4.261e-02 1.209e-01 6.747e-04 0.7000
Erysipelotrichaceae_incertae_sedis.Otu0818 1 DrugBefore_YES 2.499e-03 3.062e-03 1.373e-03 0.6923
Erysipelotrichaceae_incertae_sedis.Otu0818 2 DrugBefore_NO 9.410e-04 1.540e-03 0.000e+00 0.4286
Erysipelotrichaceae_incertae_sedis.Otu0818 2 DrugBefore_YES 1.871e-03 3.049e-03 4.808e-04 1.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 3 DrugBefore_NO 1.448e-02 1.863e-02 6.028e-03 1.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 3 DrugBefore_YES 4.854e-03 8.297e-03 1.491e-03 1.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 4 DrugBefore_NO 3.076e-02 7.402e-02 2.127e-04 0.6667
Erysipelotrichaceae_incertae_sedis.Otu0818 4 DrugBefore_YES 1.642e-03 9.321e-04 2.008e-03 1.0000
Enterococcus.Otu1019 1 DrugBefore_NO 7.372e-03 2.264e-02 0.000e+00 0.4000
Enterococcus.Otu1019 1 DrugBefore_YES 2.860e-04 9.172e-04 0.000e+00 0.1538
Enterococcus.Otu1019 2 DrugBefore_NO 4.235e-04 6.395e-04 0.000e+00 0.4286
Enterococcus.Otu1019 2 DrugBefore_YES 7.127e-02 2.243e-01 0.000e+00 0.4000
Enterococcus.Otu1019 3 DrugBefore_NO 3.121e-04 7.645e-04 0.000e+00 0.1667
Enterococcus.Otu1019 3 DrugBefore_YES 2.382e-04 4.306e-04 0.000e+00 0.3750
Enterococcus.Otu1019 4 DrugBefore_NO 5.194e-05 1.272e-04 0.000e+00 0.1667
Enterococcus.Otu1019 4 DrugBefore_YES 3.102e-04 8.206e-04 0.000e+00 0.1429
Bacteroides.Otu0661 1 DrugBefore_NO 1.512e-02 2.520e-02 2.777e-03 0.7000
Bacteroides.Otu0661 1 DrugBefore_YES 1.291e-02 2.254e-02 3.919e-03 0.7692
Bacteroides.Otu0661 2 DrugBefore_NO 3.593e-03 4.546e-03 2.518e-03 0.5714
Bacteroides.Otu0661 2 DrugBefore_YES 1.765e-02 1.959e-02 1.243e-02 0.8000
Bacteroides.Otu0661 3 DrugBefore_NO 1.685e-03 4.127e-03 0.000e+00 0.1667
Bacteroides.Otu0661 3 DrugBefore_YES 1.643e-02 1.528e-02 1.900e-02 0.7500
Bacteroides.Otu0661 4 DrugBefore_NO 5.874e-03 9.146e-03 0.000e+00 0.3333
Bacteroides.Otu0661 4 DrugBefore_YES 9.320e-03 1.157e-02 7.584e-03 0.8571
Bacteroides.Otu2343 1 DrugBefore_NO 2.821e-03 5.299e-03 3.268e-04 0.5000
Bacteroides.Otu2343 1 DrugBefore_YES 1.169e-02 3.588e-02 4.426e-05 0.5385
Bacteroides.Otu2343 2 DrugBefore_NO 3.616e-02 7.792e-02 6.655e-03 0.7143
Bacteroides.Otu2343 2 DrugBefore_YES 2.649e-03 6.645e-03 0.000e+00 0.4000
Bacteroides.Otu2343 3 DrugBefore_NO 7.407e-03 1.814e-02 0.000e+00 0.1667
Bacteroides.Otu2343 3 DrugBefore_YES 7.403e-03 1.474e-02 6.869e-05 0.5000
Bacteroides.Otu2343 4 DrugBefore_NO 4.471e-03 1.095e-02 0.000e+00 0.1667
Bacteroides.Otu2343 4 DrugBefore_YES 1.733e-02 4.222e-02 0.000e+00 0.4286
Bacteroides.Otu0006 1 DrugBefore_NO 8.986e-03 9.998e-03 5.553e-03 0.8000
Bacteroides.Otu0006 1 DrugBefore_YES 1.169e-02 9.451e-03 1.076e-02 0.8462
Bacteroides.Otu0006 2 DrugBefore_NO 1.264e-03 1.872e-03 8.251e-04 0.7143
Bacteroides.Otu0006 2 DrugBefore_YES 1.719e-02 1.383e-02 1.831e-02 0.8000
Bacteroides.Otu0006 3 DrugBefore_NO 6.089e-03 1.227e-02 0.000e+00 0.3333
Bacteroides.Otu0006 3 DrugBefore_YES 1.119e-02 1.065e-02 9.605e-03 0.7500
Bacteroides.Otu0006 4 DrugBefore_NO 1.274e-02 1.517e-02 7.446e-03 0.5000
Bacteroides.Otu0006 4 DrugBefore_YES 1.184e-02 1.214e-02 9.315e-03 0.8571
Lachnospiracea_incertae_sedis.Otu0778 1 DrugBefore_NO 1.746e-03 3.333e-03 5.304e-04 0.7000
Lachnospiracea_incertae_sedis.Otu0778 1 DrugBefore_YES 1.864e-03 3.785e-03 0.000e+00 0.4615
Lachnospiracea_incertae_sedis.Otu0778 2 DrugBefore_NO 9.172e-03 1.247e-02 3.132e-03 0.8571
Lachnospiracea_incertae_sedis.Otu0778 2 DrugBefore_YES 4.176e-03 8.101e-03 8.821e-04 0.7000
Lachnospiracea_incertae_sedis.Otu0778 3 DrugBefore_NO 6.242e-04 7.945e-04 2.973e-04 0.5000
Lachnospiracea_incertae_sedis.Otu0778 3 DrugBefore_YES 1.121e-02 1.658e-02 1.885e-03 0.6250
Lachnospiracea_incertae_sedis.Otu0778 4 DrugBefore_NO 6.238e-02 7.485e-02 4.801e-02 0.8333
Lachnospiracea_incertae_sedis.Otu0778 4 DrugBefore_YES 5.821e-03 8.373e-03 1.223e-04 0.5714

(1.6.1.4.5.2.2.2.1.1.1) Figure 1030. Abundance. Data grouped by visit,Drug.Before.Diet. bar_stacked plot. Image file: plots/32373dc6968.svg.

(1.6.1.4.5.2.2.2.1.1.1) Figure 1031. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32326efc54c.svg.

(1.6.1.4.5.2.2.2.1.1.1) Figure 1032. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32332162d68.svg.

(1.6.1.4.5.2.2.2.1.1.1) Figure 1033. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32374065c71.svg.

(1.6.1.4.5.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.1.2.1) Figure 1034. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/3235569f09d.svg.

(1.6.1.4.5.2.2.2.1.2.1) Figure 1035. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/323657dc599.svg.

(1.6.1.4.5.2.2.2.1.2.1) Figure 1036. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32344d59256.svg.

(1.6.1.4.5.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.6.1.4.5.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.2.1.1) Figure 1037. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/32336f9e5e2.svg.

(1.6.1.4.5.2.2.2.2.1.1) Figure 1038. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/323ae61dfe.svg.

(1.6.1.4.5.2.2.2.2.1.1) Figure 1039. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/32323269323.svg.

(1.6.1.4.5.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.2.2.2.1) Figure 1040. Abundance. Data grouped by visit,Drug.Before.Diet. bar (sample mean) plot. Image file: plots/323526cc868.svg.

(1.6.1.4.5.2.2.2.2.2.1) Figure 1041. Abundance. Data grouped by visit,Drug.Before.Diet. violin plot. Image file: plots/32323dcd9e6.svg.

(1.6.1.4.5.2.2.2.2.2.1) Figure 1042. Abundance. Data grouped by visit,Drug.Before.Diet. boxplot plot. Image file: plots/3239a91211.svg.

(1.6.1.4.5.2.2.3) Abundance. profile sorting order: Ranking by 'stabsel' method
(1.6.1.4.5.2.2.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.6.1.4.5.2.2.4.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.6.1.4.5.2.2.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.1.1.0) Table 449. Data table used for plots. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.4.1.1.0-32369d53e47.1.6.1.4.5.2.2.4.1.1.csv

.record.id visit Drug.Before.Diet feature Abundance
SM1 1 DrugBefore_YES Bacteroides.Otu0001 3.325e-02
SM10 3 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM100 4 DrugBefore_YES Bacteroides.Otu0001 7.692e-05
SM11 2 DrugBefore_YES Bacteroides.Otu0001 2.280e-01
SM12 1 DrugBefore_YES Bacteroides.Otu0001 2.363e-01
SM13 1 DrugBefore_NO Bacteroides.Otu0001 2.143e-02
SM14 1 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM16 4 DrugBefore_NO Bacteroides.Otu0001 3.835e-02
SM17 1 DrugBefore_YES Bacteroides.Otu0001 1.738e-01
SM18 2 DrugBefore_NO Bacteroides.Otu0001 1.343e-03
SM19 2 DrugBefore_NO Bacteroides.Otu0001 3.656e-02
SM2 1 DrugBefore_NO Bacteroides.Otu0001 7.129e-03
SM21 1 DrugBefore_NO Bacteroides.Otu0001 9.063e-02
SM22 1 DrugBefore_YES Bacteroides.Otu0001 1.800e-01
SM23 2 DrugBefore_YES Bacteroides.Otu0001 2.207e-01
SM24 1 DrugBefore_NO Bacteroides.Otu0001 6.084e-02
SM25 4 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM29 3 DrugBefore_YES Bacteroides.Otu0001 1.015e-01
SM3 2 DrugBefore_YES Bacteroides.Otu0001 5.679e-02
SM30 4 DrugBefore_YES Bacteroides.Otu0001 4.615e-02
SM33 1 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM36 4 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM38 2 DrugBefore_YES Bacteroides.Otu0001 2.849e-01
SM39 1 DrugBefore_NO Bacteroides.Otu0001 1.512e-01
SM40 4 DrugBefore_NO Bacteroides.Otu0001 1.767e-02
SM41 1 DrugBefore_YES Bacteroides.Otu0001 4.380e-02
SM42 4 DrugBefore_NO Bacteroides.Otu0001 2.641e-01
SM43 4 DrugBefore_YES Bacteroides.Otu0001 1.241e-01
SM45 2 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM49 1 DrugBefore_YES Bacteroides.Otu0001 1.179e-01
SM5 3 DrugBefore_YES Bacteroides.Otu0001 2.741e-01
SM50 3 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM51 4 DrugBefore_YES Bacteroides.Otu0001 2.826e-01
SM52 1 DrugBefore_NO Bacteroides.Otu0001 5.829e-02
SM53 2 DrugBefore_YES Bacteroides.Otu0001 2.368e-01
SM54 3 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM56 2 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM57 1 DrugBefore_YES Bacteroides.Otu0001 1.037e-01
SM58 2 DrugBefore_NO Bacteroides.Otu0001 1.620e-04
SM59 3 DrugBefore_NO Bacteroides.Otu0001 3.745e-03
SM60 3 DrugBefore_YES Bacteroides.Otu0001 2.447e-01
SM62 1 DrugBefore_YES Bacteroides.Otu0001 5.347e-01
SM64 2 DrugBefore_YES Bacteroides.Otu0001 3.508e-01
SM65 3 DrugBefore_YES Bacteroides.Otu0001 8.092e-02
SM67 4 DrugBefore_YES Bacteroides.Otu0001 2.186e-01
SM68 4 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM69 4 DrugBefore_YES Bacteroides.Otu0001 1.655e-01
SM71 3 DrugBefore_YES Bacteroides.Otu0001 2.788e-01
SM73 1 DrugBefore_NO Bacteroides.Otu0001 1.891e-01
SM75 3 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM77 2 DrugBefore_YES Bacteroides.Otu0001 2.034e-01
SM79 2 DrugBefore_NO Bacteroides.Otu0001 2.642e-02
SM8 1 DrugBefore_NO Bacteroides.Otu0001 5.265e-02
SM82 4 DrugBefore_YES Bacteroides.Otu0001 1.052e-02
SM83 1 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM84 1 DrugBefore_YES Bacteroides.Otu0001 1.247e-01
SM86 2 DrugBefore_YES Bacteroides.Otu0001 0.000e+00
SM87 1 DrugBefore_YES Bacteroides.Otu0001 1.941e-01
SM88 2 DrugBefore_YES Bacteroides.Otu0001 2.302e-02
SM9 2 DrugBefore_NO Bacteroides.Otu0001 3.497e-02
SM90 2 DrugBefore_NO Bacteroides.Otu0001 3.713e-02
SM91 3 DrugBefore_YES Bacteroides.Otu0001 1.254e-01
SM92 3 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM93 1 DrugBefore_YES Bacteroides.Otu0001 3.120e-01
SM96 1 DrugBefore_NO Bacteroides.Otu0001 0.000e+00
SM98 3 DrugBefore_NO Bacteroides.Otu0001 3.648e-02
SM99 3 DrugBefore_NO Bacteroides.Otu0001 4.305e-02
SM1 1 DrugBefore_YES Bacteroides.Otu2520 1.003e-01
SM10 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM100 4 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM11 2 DrugBefore_YES Bacteroides.Otu2520 1.344e-01
SM12 1 DrugBefore_YES Bacteroides.Otu2520 1.504e-01
SM13 1 DrugBefore_NO Bacteroides.Otu2520 1.473e-02
SM14 1 DrugBefore_NO Bacteroides.Otu2520 3.786e-04
SM16 4 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM17 1 DrugBefore_YES Bacteroides.Otu2520 1.862e-02
SM18 2 DrugBefore_NO Bacteroides.Otu2520 1.074e-02
SM19 2 DrugBefore_NO Bacteroides.Otu2520 9.255e-04
SM2 1 DrugBefore_NO Bacteroides.Otu2520 1.638e-01
SM21 1 DrugBefore_NO Bacteroides.Otu2520 4.540e-03
SM22 1 DrugBefore_YES Bacteroides.Otu2520 2.610e-02
SM23 2 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM24 1 DrugBefore_NO Bacteroides.Otu2520 5.531e-03
SM25 4 DrugBefore_NO Bacteroides.Otu2520 3.053e-01
SM29 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM3 2 DrugBefore_YES Bacteroides.Otu2520 5.657e-04
SM30 4 DrugBefore_YES Bacteroides.Otu2520 3.250e-04
SM33 1 DrugBefore_YES Bacteroides.Otu2520 7.120e-02
SM36 4 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM38 2 DrugBefore_YES Bacteroides.Otu2520 9.696e-02
SM39 1 DrugBefore_NO Bacteroides.Otu2520 8.620e-03
SM40 4 DrugBefore_NO Bacteroides.Otu2520 5.920e-02
SM41 1 DrugBefore_YES Bacteroides.Otu2520 1.440e-01
SM42 4 DrugBefore_NO Bacteroides.Otu2520 1.665e-04
SM43 4 DrugBefore_YES Bacteroides.Otu2520 3.957e-02
SM45 2 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM49 1 DrugBefore_YES Bacteroides.Otu2520 1.715e-01
SM5 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM50 3 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM51 4 DrugBefore_YES Bacteroides.Otu2520 3.368e-02
SM52 1 DrugBefore_NO Bacteroides.Otu2520 2.179e-04
SM53 2 DrugBefore_YES Bacteroides.Otu2520 7.192e-05
SM54 3 DrugBefore_YES Bacteroides.Otu2520 2.426e-01
SM56 2 DrugBefore_YES Bacteroides.Otu2520 9.465e-03
SM57 1 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM58 2 DrugBefore_NO Bacteroides.Otu2520 3.239e-04
SM59 3 DrugBefore_NO Bacteroides.Otu2520 2.996e-03
SM60 3 DrugBefore_YES Bacteroides.Otu2520 5.548e-02
SM62 1 DrugBefore_YES Bacteroides.Otu2520 1.525e-02
SM64 2 DrugBefore_YES Bacteroides.Otu2520 9.297e-03
SM65 3 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM67 4 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM68 4 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM69 4 DrugBefore_YES Bacteroides.Otu2520 1.197e-02
SM71 3 DrugBefore_YES Bacteroides.Otu2520 2.162e-02
SM73 1 DrugBefore_NO Bacteroides.Otu2520 5.047e-04
SM75 3 DrugBefore_NO Bacteroides.Otu2520 2.037e-03
SM77 2 DrugBefore_YES Bacteroides.Otu2520 8.359e-02
SM79 2 DrugBefore_NO Bacteroides.Otu2520 1.576e-02
SM8 1 DrugBefore_NO Bacteroides.Otu2520 0.000e+00
SM82 4 DrugBefore_YES Bacteroides.Otu2520 3.568e-01
SM83 1 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM84 1 DrugBefore_YES Bacteroides.Otu2520 2.912e-03
SM86 2 DrugBefore_YES Bacteroides.Otu2520 0.000e+00
SM87 1 DrugBefore_YES Bacteroides.Otu2520 4.566e-02
SM88 2 DrugBefore_YES Bacteroides.Otu2520 1.604e-01
SM9 2 DrugBefore_NO Bacteroides.Otu2520 5.636e-02
SM90 2 DrugBefore_NO Bacteroides.Otu2520 2.558e-02
SM91 3 DrugBefore_YES Bacteroides.Otu2520 8.567e-02
SM92 3 DrugBefore_NO Bacteroides.Otu2520 9.504e-03
SM93 1 DrugBefore_YES Bacteroides.Otu2520 4.034e-04
SM96 1 DrugBefore_NO Bacteroides.Otu2520 4.602e-01
SM98 3 DrugBefore_NO Bacteroides.Otu2520 9.832e-04
SM99 3 DrugBefore_NO Bacteroides.Otu2520 4.757e-04
SM1 1 DrugBefore_YES Bacteroides.Otu0848 5.888e-03
SM10 3 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM100 4 DrugBefore_YES Bacteroides.Otu0848 1.538e-04
SM11 2 DrugBefore_YES Bacteroides.Otu0848 1.642e-02
SM12 1 DrugBefore_YES Bacteroides.Otu0848 1.120e-02
SM13 1 DrugBefore_NO Bacteroides.Otu0848 8.929e-03
SM14 1 DrugBefore_NO Bacteroides.Otu0848 3.786e-04
SM16 4 DrugBefore_NO Bacteroides.Otu0848 4.875e-04
SM17 1 DrugBefore_YES Bacteroides.Otu0848 3.682e-02
SM18 2 DrugBefore_NO Bacteroides.Otu0848 6.715e-04
SM19 2 DrugBefore_NO Bacteroides.Otu0848 2.360e-02
SM2 1 DrugBefore_NO Bacteroides.Otu0848 8.741e-03
SM21 1 DrugBefore_NO Bacteroides.Otu0848 6.558e-03
SM22 1 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM23 2 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM24 1 DrugBefore_NO Bacteroides.Otu0848 2.958e-03
SM25 4 DrugBefore_NO Bacteroides.Otu0848 8.319e-04
SM29 3 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM3 2 DrugBefore_YES Bacteroides.Otu0848 3.779e-02
SM30 4 DrugBefore_YES Bacteroides.Otu0848 2.275e-03
SM33 1 DrugBefore_YES Bacteroides.Otu0848 5.901e-03
SM36 4 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM38 2 DrugBefore_YES Bacteroides.Otu0848 7.790e-02
SM39 1 DrugBefore_NO Bacteroides.Otu0848 5.281e-03
SM40 4 DrugBefore_NO Bacteroides.Otu0848 1.387e-03
SM41 1 DrugBefore_YES Bacteroides.Otu0848 5.539e-02
SM42 4 DrugBefore_NO Bacteroides.Otu0848 8.323e-05
SM43 4 DrugBefore_YES Bacteroides.Otu0848 2.010e-01
SM45 2 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM49 1 DrugBefore_YES Bacteroides.Otu0848 1.082e-01
SM5 3 DrugBefore_YES Bacteroides.Otu0848 8.476e-05
SM50 3 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM51 4 DrugBefore_YES Bacteroides.Otu0848 4.751e-02
SM52 1 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM53 2 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM54 3 DrugBefore_YES Bacteroides.Otu0848 1.414e-02
SM56 2 DrugBefore_YES Bacteroides.Otu0848 6.527e-04
SM57 1 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM58 2 DrugBefore_NO Bacteroides.Otu0848 8.098e-04
SM59 3 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM60 3 DrugBefore_YES Bacteroides.Otu0848 2.444e-01
SM62 1 DrugBefore_YES Bacteroides.Otu0848 5.058e-02
SM64 2 DrugBefore_YES Bacteroides.Otu0848 2.060e-03
SM65 3 DrugBefore_YES Bacteroides.Otu0848 1.181e-01
SM67 4 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM68 4 DrugBefore_NO Bacteroides.Otu0848 8.725e-02
SM69 4 DrugBefore_YES Bacteroides.Otu0848 6.310e-02
SM71 3 DrugBefore_YES Bacteroides.Otu0848 1.770e-02
SM73 1 DrugBefore_NO Bacteroides.Otu0848 1.918e-03
SM75 3 DrugBefore_NO Bacteroides.Otu0848 0.000e+00
SM77 2 DrugBefore_YES Bacteroides.Otu0848 6.449e-02
SM79 2 DrugBefore_NO Bacteroides.Otu0848 3.034e-03
SM8 1 DrugBefore_NO Bacteroides.Otu0848 1.294e-01
SM82 4 DrugBefore_YES Bacteroides.Otu0848 2.948e-02
SM83 1 DrugBefore_YES Bacteroides.Otu0848 2.746e-04
SM84 1 DrugBefore_YES Bacteroides.Otu0848 8.057e-03
SM86 2 DrugBefore_YES Bacteroides.Otu0848 0.000e+00
SM87 1 DrugBefore_YES Bacteroides.Otu0848 1.750e-02
SM88 2 DrugBefore_YES Bacteroides.Otu0848 3.666e-03
SM9 2 DrugBefore_NO Bacteroides.Otu0848 2.057e-03
SM90 2 DrugBefore_NO Bacteroides.Otu0848 1.815e-02
SM91 3 DrugBefore_YES Bacteroides.Otu0848 8.972e-02
SM92 3 DrugBefore_NO Bacteroides.Otu0848 4.849e-01
SM93 1 DrugBefore_YES Bacteroides.Otu0848 4.734e-02
SM96 1 DrugBefore_NO Bacteroides.Otu0848 6.533e-03
SM98 3 DrugBefore_NO Bacteroides.Otu0848 3.933e-04

(1.6.1.4.5.2.2.4.1.1.1) Widget 460. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.4.1.1.1-32349845d36Dynamic.Pivot.Table.html

(1.6.1.4.5.2.2.4.1.1.1) Widget 461. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by visit,Drug.Before.Diet. Click to see HTML widget file in full window: ./1.6.1.4.5.2.2.4.1.1.1-3231fbdb1a0Dynamic.Pivot.Table.html

(1.6.1.4.5.2.2.4.1.1.1) Table 450. Summary table. Data grouped by visit,Drug.Before.Diet. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.6.1.4.5.2.2.4.1.1.1-3232d46795f.1.6.1.4.5.2.2.4.1.1.csv

feature visit Drug.Before.Diet mean sd median incidence
Roseburia.Otu2084 1 DrugBefore_NO 1.937e-03 2.365e-03 9.828e-04 0.9000
Roseburia.Otu2084 1 DrugBefore_YES 1.177e-03 1.508e-03 3.600e-04 0.5385
Roseburia.Otu2084 2 DrugBefore_NO 3.071e-03 4.067e-03 2.888e-03 0.7143
Roseburia.Otu2084 2 DrugBefore_YES 2.098e-03 1.898e-03 1.977e-03 0.8000
Roseburia.Otu2084 3 DrugBefore_NO 3.054e-03 3.721e-03 1.468e-03 0.6667
Roseburia.Otu2084 3 DrugBefore_YES 5.079e-03 4.864e-03 3.017e-03 1.0000
Roseburia.Otu2084 4 DrugBefore_NO 1.406e-02 1.660e-02 6.506e-03 1.0000
Roseburia.Otu2084 4 DrugBefore_YES 5.741e-03 7.091e-03 3.123e-03 0.8571
Lachnospiraceae.Otu2076 1 DrugBefore_NO 3.033e-04 4.011e-04 9.106e-05 0.5000
Lachnospiraceae.Otu2076 1 DrugBefore_YES 2.885e-04 6.225e-04 0.000e+00 0.2308
Lachnospiraceae.Otu2076 2 DrugBefore_NO 8.298e-04 1.071e-03 0.000e+00 0.4286
Lachnospiraceae.Otu2076 2 DrugBefore_YES 1.764e-03 2.998e-03 0.000e+00 0.4000
Lachnospiraceae.Otu2076 3 DrugBefore_NO 3.422e-04 5.309e-04 0.000e+00 0.3333
Lachnospiraceae.Otu2076 3 DrugBefore_YES 4.841e-03 8.815e-03 4.792e-04 0.5000
Lachnospiraceae.Otu2076 4 DrugBefore_NO 5.781e-03 4.483e-03 5.085e-03 0.8333
Lachnospiraceae.Otu2076 4 DrugBefore_YES 2.839e-03 5.516e-03 0.000e+00 0.4286
Lachnospiracea_incertae_sedis.Otu0778 1 DrugBefore_NO 1.746e-03 3.333e-03 5.304e-04 0.7000
Lachnospiracea_incertae_sedis.Otu0778 1 DrugBefore_YES 1.864e-03 3.785e-03 0.000e+00 0.4615
Lachnospiracea_incertae_sedis.Otu0778 2 DrugBefore_NO 9.172e-03 1.247e-02 3.132e-03 0.8571
Lachnospiracea_incertae_sedis.Otu0778 2 DrugBefore_YES 4.176e-03 8.101e-03 8.821e-04 0.7000
Lachnospiracea_incertae_sedis.Otu0778 3 DrugBefore_NO 6.242e-04 7.945e-04 2.973e-04 0.5000
Lachnospiracea_incertae_sedis.Otu0778 3 DrugBefore_YES 1.121e-02 1.658e-02 1.885e-03 0.6250
Lachnospiracea_incertae_sedis.Otu0778 4 DrugBefore_NO 6.238e-02 7.485e-02 4.801e-02 0.8333
Lachnospiracea_incertae_sedis.Otu0778 4 DrugBefore_YES 5.821e-03 8.373e-03 1.223e-04 0.5714
Roseburia.Otu1051 1 DrugBefore_NO 3.714e-03 5.251e-03 1.918e-03 0.9000
Roseburia.Otu1051 1 DrugBefore_YES 1.551e-03 2.730e-03 4.014e-04 0.6154
Roseburia.Otu1051 2 DrugBefore_NO 1.834e-03 2.918e-03 9.787e-04 0.8571
Roseburia.Otu1051 2 DrugBefore_YES 6.122e-03 1.020e-02 1.132e-03 1.0000
Roseburia.Otu1051 3 DrugBefore_NO 7.745e-03 1.290e-02 2.734e-03 0.8333
Roseburia.Otu1051 3 DrugBefore_YES 5.566e-03 8.138e-03 2.576e-03 1.0000
Roseburia.Otu1051 4 DrugBefore_NO 2.795e-02 4.682e-02 1.090e-02 1.0000
Roseburia.Otu1051 4 DrugBefore_YES 8.369e-03 1.028e-02 1.043e-03 0.8571
Roseburia.Otu2637 1 DrugBefore_NO 6.454e-04 1.069e-03 3.914e-04 0.7000
Roseburia.Otu2637 1 DrugBefore_YES 2.831e-04 6.064e-04 0.000e+00 0.2308
Roseburia.Otu2637 2 DrugBefore_NO 1.069e-03 1.529e-03 1.620e-04 0.5714
Roseburia.Otu2637 2 DrugBefore_YES 2.665e-03 3.698e-03 9.360e-04 0.7000
Roseburia.Otu2637 3 DrugBefore_NO 8.385e-04 1.692e-03 2.052e-04 0.6667
Roseburia.Otu2637 3 DrugBefore_YES 8.574e-04 1.011e-03 6.601e-04 0.6250
Roseburia.Otu2637 4 DrugBefore_NO 5.879e-03 9.539e-03 3.046e-03 0.6667
Roseburia.Otu2637 4 DrugBefore_YES 2.959e-03 3.585e-03 6.692e-04 0.5714
Alistipes.Otu1466 1 DrugBefore_NO 1.673e-02 2.486e-02 0.000e+00 0.4000
Alistipes.Otu1466 1 DrugBefore_YES 6.337e-03 8.432e-03 3.106e-03 0.6154
Alistipes.Otu1466 2 DrugBefore_NO 9.792e-04 1.962e-03 0.000e+00 0.2857
Alistipes.Otu1466 2 DrugBefore_YES 2.180e-02 4.735e-02 0.000e+00 0.4000
Alistipes.Otu1466 3 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Alistipes.Otu1466 3 DrugBefore_YES 3.647e-03 6.175e-03 8.589e-04 0.6250
Alistipes.Otu1466 4 DrugBefore_NO 2.775e-04 6.797e-04 0.000e+00 0.1667
Alistipes.Otu1466 4 DrugBefore_YES 2.837e-03 3.756e-03 1.789e-03 0.5714
Lachnospiraceae.Otu1734 1 DrugBefore_NO 3.594e-03 7.089e-03 9.929e-04 0.9000
Lachnospiraceae.Otu1734 1 DrugBefore_YES 4.744e-04 6.572e-04 1.732e-04 0.5385
Lachnospiraceae.Otu1734 2 DrugBefore_NO 4.522e-04 5.393e-04 1.957e-04 0.7143
Lachnospiraceae.Otu1734 2 DrugBefore_YES 1.127e-03 1.433e-03 3.227e-04 0.9000
Lachnospiraceae.Otu1734 3 DrugBefore_NO 2.255e-03 1.754e-03 2.073e-03 0.8333
Lachnospiraceae.Otu1734 3 DrugBefore_YES 7.208e-03 9.784e-03 1.696e-03 0.7500
Lachnospiraceae.Otu1734 4 DrugBefore_NO 3.508e-03 3.368e-03 2.976e-03 1.0000
Lachnospiraceae.Otu1734 4 DrugBefore_YES 4.848e-03 5.752e-03 4.015e-03 0.8571
Bacteroides.Otu0775 1 DrugBefore_NO 7.548e-04 1.390e-03 1.221e-04 0.6000
Bacteroides.Otu0775 1 DrugBefore_YES 2.067e-03 3.013e-03 6.441e-04 0.6154
Bacteroides.Otu0775 2 DrugBefore_NO 1.131e-03 2.948e-03 0.000e+00 0.2857
Bacteroides.Otu0775 2 DrugBefore_YES 2.114e-03 3.943e-03 2.484e-04 0.7000
Bacteroides.Otu0775 3 DrugBefore_NO 6.242e-05 1.529e-04 0.000e+00 0.1667
Bacteroides.Otu0775 3 DrugBefore_YES 2.306e-03 3.913e-03 7.880e-04 0.7500
Bacteroides.Otu0775 4 DrugBefore_NO 5.379e-03 1.313e-02 0.000e+00 0.3333
Bacteroides.Otu0775 4 DrugBefore_YES 5.006e-03 7.885e-03 6.692e-04 0.7143
Haemophilus.Otu1497 1 DrugBefore_NO 1.032e-03 2.397e-03 0.000e+00 0.4000
Haemophilus.Otu1497 1 DrugBefore_YES 1.341e-04 2.383e-04 0.000e+00 0.3077
Haemophilus.Otu1497 2 DrugBefore_NO 1.860e-03 2.229e-03 1.650e-03 0.7143
Haemophilus.Otu1497 2 DrugBefore_YES 7.843e-04 1.667e-03 2.816e-05 0.5000
Haemophilus.Otu1497 3 DrugBefore_NO 1.073e-02 1.884e-02 0.000e+00 0.3333
Haemophilus.Otu1497 3 DrugBefore_YES 2.894e-03 4.509e-03 1.081e-03 0.6250
Haemophilus.Otu1497 4 DrugBefore_NO 1.678e-02 3.658e-02 1.570e-03 0.8333
Haemophilus.Otu1497 4 DrugBefore_YES 1.886e-02 4.936e-02 1.554e-04 0.5714
Bacteroides.Otu0863 1 DrugBefore_NO 4.444e-02 7.340e-02 2.085e-02 0.9000
Bacteroides.Otu0863 1 DrugBefore_YES 2.294e-02 4.344e-02 3.300e-03 0.8462
Bacteroides.Otu0863 2 DrugBefore_NO 5.955e-03 1.395e-02 5.036e-04 0.7143
Bacteroides.Otu0863 2 DrugBefore_YES 1.605e-02 4.328e-02 1.028e-04 0.5000
Bacteroides.Otu0863 3 DrugBefore_NO 2.915e-03 4.516e-03 0.000e+00 0.3333
Bacteroides.Otu0863 3 DrugBefore_YES 6.975e-03 9.227e-03 3.995e-03 0.7500
Bacteroides.Otu0863 4 DrugBefore_NO 2.470e-03 5.525e-03 0.000e+00 0.3333
Bacteroides.Otu0863 4 DrugBefore_YES 2.140e-02 3.827e-02 4.546e-03 0.8571
Bacteroides.Otu2460 1 DrugBefore_NO 1.620e-03 3.200e-03 6.022e-04 0.6000
Bacteroides.Otu2460 1 DrugBefore_YES 3.684e-03 4.708e-03 1.212e-03 0.7692
Bacteroides.Otu2460 2 DrugBefore_NO 2.022e-03 3.714e-03 1.679e-04 0.5714
Bacteroides.Otu2460 2 DrugBefore_YES 1.266e-03 1.922e-03 2.351e-04 0.8000
Bacteroides.Otu2460 3 DrugBefore_NO 1.843e-04 3.113e-04 0.000e+00 0.3333
Bacteroides.Otu2460 3 DrugBefore_YES 3.584e-03 8.162e-03 3.493e-04 0.7500
Bacteroides.Otu2460 4 DrugBefore_NO 1.134e-03 1.829e-03 4.625e-04 0.5000
Bacteroides.Otu2460 4 DrugBefore_YES 4.495e-04 5.558e-04 2.308e-04 0.5714
Bacteroides.Otu2654 1 DrugBefore_NO 7.257e-02 1.423e-01 2.235e-03 0.7000
Bacteroides.Otu2654 1 DrugBefore_YES 2.880e-02 3.291e-02 1.159e-02 0.8462
Bacteroides.Otu2654 2 DrugBefore_NO 1.413e-03 1.664e-03 8.251e-04 0.7143
Bacteroides.Otu2654 2 DrugBefore_YES 9.244e-03 1.863e-02 1.462e-03 0.6000
Bacteroides.Otu2654 3 DrugBefore_NO 1.527e-03 2.490e-03 2.610e-04 0.6667
Bacteroides.Otu2654 3 DrugBefore_YES 1.201e-02 2.697e-02 4.610e-04 0.7500
Bacteroides.Otu2654 4 DrugBefore_NO 3.480e-03 7.820e-03 3.116e-04 0.5000
Bacteroides.Otu2654 4 DrugBefore_YES 1.339e-02 1.949e-02 4.248e-03 1.0000
Lachnospiraceae.Otu2599 1 DrugBefore_NO 5.018e-03 6.987e-03 2.569e-03 1.0000
Lachnospiraceae.Otu2599 1 DrugBefore_YES 6.873e-04 1.083e-03 2.656e-04 0.6154
Lachnospiraceae.Otu2599 2 DrugBefore_NO 1.500e-03 2.257e-03 4.893e-04 0.7143
Lachnospiraceae.Otu2599 2 DrugBefore_YES 1.773e-03 2.306e-03 5.735e-04 1.0000
Lachnospiraceae.Otu2599 3 DrugBefore_NO 5.942e-03 3.879e-03 5.631e-03 1.0000
Lachnospiraceae.Otu2599 3 DrugBefore_YES 4.873e-03 6.116e-03 2.215e-03 0.8750
Lachnospiraceae.Otu2599 4 DrugBefore_NO 5.078e-03 3.380e-03 6.285e-03 1.0000
Lachnospiraceae.Otu2599 4 DrugBefore_YES 3.246e-03 4.757e-03 1.765e-03 0.8571
Clostridium_XI.Otu2681 1 DrugBefore_NO 1.129e-02 3.192e-02 1.920e-04 0.6000
Clostridium_XI.Otu2681 1 DrugBefore_YES 6.127e-04 1.379e-03 0.000e+00 0.3077
Clostridium_XI.Otu2681 2 DrugBefore_NO 3.608e-04 7.700e-04 0.000e+00 0.2857
Clostridium_XI.Otu2681 2 DrugBefore_YES 7.630e-04 1.653e-03 7.499e-05 0.6000
Clostridium_XI.Otu2681 3 DrugBefore_NO 3.752e-04 4.117e-04 3.568e-04 0.5000
Clostridium_XI.Otu2681 3 DrugBefore_YES 6.615e-04 8.345e-04 2.382e-04 0.6250
Clostridium_XI.Otu2681 4 DrugBefore_NO 3.957e-03 4.764e-03 1.872e-03 0.8333
Clostridium_XI.Otu2681 4 DrugBefore_YES 2.089e-03 2.658e-03 9.325e-04 0.8571
Bacteroides.Otu2437 1 DrugBefore_NO 3.138e-03 7.848e-03 3.035e-05 0.5000
Bacteroides.Otu2437 1 DrugBefore_YES 2.995e-03 4.856e-03 0.000e+00 0.4615
Bacteroides.Otu2437 2 DrugBefore_NO 1.358e-02 3.129e-02 0.000e+00 0.2857
Bacteroides.Otu2437 2 DrugBefore_YES 5.107e-03 1.027e-02 0.000e+00 0.4000
Bacteroides.Otu2437 3 DrugBefore_NO 4.370e-04 1.070e-03 0.000e+00 0.1667
Bacteroides.Otu2437 3 DrugBefore_YES 5.708e-03 1.073e-02 6.266e-04 0.5000
Bacteroides.Otu2437 4 DrugBefore_NO 1.319e-02 3.228e-02 0.000e+00 0.3333
Bacteroides.Otu2437 4 DrugBefore_YES 1.237e-02 2.021e-02 9.174e-05 0.5714
Parabacteroides.Otu1655 1 DrugBefore_NO 1.046e-04 2.309e-04 0.000e+00 0.2000
Parabacteroides.Otu1655 1 DrugBefore_YES 4.428e-04 8.315e-04 0.000e+00 0.3077
Parabacteroides.Otu1655 2 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Parabacteroides.Otu1655 2 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Parabacteroides.Otu1655 3 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Parabacteroides.Otu1655 3 DrugBefore_YES 4.673e-04 1.014e-03 0.000e+00 0.3750
Parabacteroides.Otu1655 4 DrugBefore_NO 1.387e-05 3.398e-05 0.000e+00 0.1667
Parabacteroides.Otu1655 4 DrugBefore_YES 1.749e-02 4.611e-02 0.000e+00 0.4286
Prevotella.Otu0634 1 DrugBefore_NO 6.920e-03 1.274e-02 0.000e+00 0.3000
Prevotella.Otu0634 1 DrugBefore_YES 6.834e-04 1.887e-03 0.000e+00 0.1538
Prevotella.Otu0634 2 DrugBefore_NO 9.588e-04 1.962e-03 1.679e-04 0.7143
Prevotella.Otu0634 2 DrugBefore_YES 1.793e-03 5.637e-03 0.000e+00 0.3000
Prevotella.Otu0634 3 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu0634 3 DrugBefore_YES 3.065e-04 8.356e-04 0.000e+00 0.2500
Prevotella.Otu0634 4 DrugBefore_NO 8.323e-05 2.039e-04 0.000e+00 0.1667
Prevotella.Otu0634 4 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Escherichia_Shigella.Otu2393 1 DrugBefore_NO 1.334e-02 4.042e-02 6.431e-05 0.5000
Escherichia_Shigella.Otu2393 1 DrugBefore_YES 1.464e-02 4.825e-02 0.000e+00 0.3077
Escherichia_Shigella.Otu2393 2 DrugBefore_NO 8.508e-04 2.001e-03 0.000e+00 0.4286
Escherichia_Shigella.Otu2393 2 DrugBefore_YES 1.239e-05 2.833e-05 0.000e+00 0.2000
Escherichia_Shigella.Otu2393 3 DrugBefore_NO 1.719e-03 1.675e-03 1.798e-03 0.6667
Escherichia_Shigella.Otu2393 3 DrugBefore_YES 2.744e-03 6.627e-03 3.157e-04 0.6250
Escherichia_Shigella.Otu2393 4 DrugBefore_NO 2.261e-04 3.197e-04 4.161e-05 0.5000
Escherichia_Shigella.Otu2393 4 DrugBefore_YES 1.362e-02 2.218e-02 1.468e-03 0.5714
Lachnospiraceae.Otu0898 1 DrugBefore_NO 2.006e-03 3.259e-03 5.874e-04 0.9000
Lachnospiraceae.Otu0898 1 DrugBefore_YES 9.104e-04 1.654e-03 3.015e-04 0.5385
Lachnospiraceae.Otu0898 2 DrugBefore_NO 2.924e-03 6.795e-03 4.125e-04 0.5714
Lachnospiraceae.Otu0898 2 DrugBefore_YES 3.443e-03 7.081e-03 4.820e-04 0.8000
Lachnospiraceae.Otu0898 3 DrugBefore_NO 3.927e-02 8.602e-02 5.137e-03 0.8333
Lachnospiraceae.Otu0898 3 DrugBefore_YES 3.200e-03 4.210e-03 1.476e-03 0.8750
Lachnospiraceae.Otu0898 4 DrugBefore_NO 2.081e-03 2.740e-03 1.248e-03 0.8333
Lachnospiraceae.Otu0898 4 DrugBefore_YES 5.301e-03 4.308e-03 3.737e-03 1.0000
Parabacteroides.Otu1378 1 DrugBefore_NO 4.050e-03 6.291e-03 3.067e-04 0.6000
Parabacteroides.Otu1378 1 DrugBefore_YES 5.643e-03 1.021e-02 0.000e+00 0.4615
Parabacteroides.Otu1378 2 DrugBefore_NO 2.850e-03 5.505e-03 0.000e+00 0.4286
Parabacteroides.Otu1378 2 DrugBefore_YES 5.236e-04 1.104e-03 0.000e+00 0.2000
Parabacteroides.Otu1378 3 DrugBefore_NO 1.229e-04 3.010e-04 0.000e+00 0.1667
Parabacteroides.Otu1378 3 DrugBefore_YES 6.450e-03 1.429e-02 0.000e+00 0.3750
Parabacteroides.Otu1378 4 DrugBefore_NO 6.658e-04 1.631e-03 0.000e+00 0.1667
Parabacteroides.Otu1378 4 DrugBefore_YES 2.756e-02 6.379e-02 0.000e+00 0.4286
Clostridiaceae_1.Otu1955 1 DrugBefore_NO 3.149e-04 4.845e-04 8.846e-05 0.6000
Clostridiaceae_1.Otu1955 1 DrugBefore_YES 8.098e-05 2.670e-04 0.000e+00 0.1538
Clostridiaceae_1.Otu1955 2 DrugBefore_NO 5.893e-05 1.559e-04 0.000e+00 0.1429
Clostridiaceae_1.Otu1955 2 DrugBefore_YES 7.844e-04 2.342e-03 0.000e+00 0.4000
Clostridiaceae_1.Otu1955 3 DrugBefore_NO 2.185e-02 3.878e-02 3.013e-03 0.8333
Clostridiaceae_1.Otu1955 3 DrugBefore_YES 1.947e-04 3.434e-04 0.000e+00 0.3750
Clostridiaceae_1.Otu1955 4 DrugBefore_NO 5.700e-03 1.160e-02 9.156e-04 0.8333
Clostridiaceae_1.Otu1955 4 DrugBefore_YES 1.815e-04 4.158e-04 0.000e+00 0.2857
Bacteroides.Otu1411 1 DrugBefore_NO 8.720e-04 2.097e-03 2.524e-05 0.5000
Bacteroides.Otu1411 1 DrugBefore_YES 1.542e-03 4.685e-03 0.000e+00 0.4615
Bacteroides.Otu1411 2 DrugBefore_NO 4.119e-04 7.132e-04 0.000e+00 0.2857
Bacteroides.Otu1411 2 DrugBefore_YES 1.446e-03 2.888e-03 9.830e-05 0.6000
Bacteroides.Otu1411 3 DrugBefore_NO 6.242e-05 1.529e-04 0.000e+00 0.1667
Bacteroides.Otu1411 3 DrugBefore_YES 3.493e-03 6.225e-03 3.932e-04 0.7500
Bacteroides.Otu1411 4 DrugBefore_NO 1.355e-03 2.894e-03 0.000e+00 0.3333
Bacteroides.Otu1411 4 DrugBefore_YES 2.275e-03 3.882e-03 7.692e-05 0.5714
Faecalibacterium.Otu0067 1 DrugBefore_NO 2.447e-02 2.587e-02 1.503e-02 1.0000
Faecalibacterium.Otu0067 1 DrugBefore_YES 1.246e-02 1.071e-02 6.632e-03 0.9231
Faecalibacterium.Otu0067 2 DrugBefore_NO 5.462e-02 1.055e-01 1.279e-02 0.8571
Faecalibacterium.Otu0067 2 DrugBefore_YES 3.949e-02 8.710e-02 7.349e-03 0.9000
Faecalibacterium.Otu0067 3 DrugBefore_NO 1.630e-02 1.924e-02 6.763e-03 0.8333
Faecalibacterium.Otu0067 3 DrugBefore_YES 2.944e-02 3.510e-02 1.759e-02 1.0000
Faecalibacterium.Otu0067 4 DrugBefore_NO 7.234e-02 7.795e-02 4.539e-02 1.0000
Faecalibacterium.Otu0067 4 DrugBefore_YES 2.888e-02 3.115e-02 1.202e-02 1.0000
Bacteroides.Otu1883 1 DrugBefore_NO 7.416e-05 2.345e-04 0.000e+00 0.1000
Bacteroides.Otu1883 1 DrugBefore_YES 2.818e-05 8.914e-05 0.000e+00 0.1538
Bacteroides.Otu1883 2 DrugBefore_NO 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu1883 2 DrugBefore_YES 7.726e-06 2.443e-05 0.000e+00 0.1000
Bacteroides.Otu1883 3 DrugBefore_NO 9.709e-05 1.858e-04 0.000e+00 0.3333
Bacteroides.Otu1883 3 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu1883 4 DrugBefore_NO 1.272e-02 3.116e-02 0.000e+00 0.1667
Bacteroides.Otu1883 4 DrugBefore_YES 3.623e-05 8.317e-05 0.000e+00 0.2857
Klebsiella.Otu1452 1 DrugBefore_NO 7.478e-04 2.154e-03 0.000e+00 0.3000
Klebsiella.Otu1452 1 DrugBefore_YES 8.292e-05 2.263e-04 0.000e+00 0.1538
Klebsiella.Otu1452 2 DrugBefore_NO 1.911e-04 3.585e-04 0.000e+00 0.2857
Klebsiella.Otu1452 2 DrugBefore_YES 1.239e-05 2.833e-05 0.000e+00 0.2000
Klebsiella.Otu1452 3 DrugBefore_NO 9.134e-03 2.219e-02 0.000e+00 0.3333
Klebsiella.Otu1452 3 DrugBefore_YES 0.000e+00 0.000e+00 0.000e+00 0.0000
Klebsiella.Otu1452 4 DrugBefore_NO 1.218e-03 1.963e-03 0.000e+00 0.3333
Klebsiella.Otu1452 4 DrugBefore_YES 1.169e-02 2.884e-02 2.308e-04 0.5714

(1.6.1.4.5.2.2.4.1.1.1) Figure 1043. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/3234c9f2c5b.svg.

(1.6.1.4.5.2.2.4.1.1.1) Figure 1044. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32322d6f6c0.svg.

(1.6.1.4.5.2.2.4.1.1.1) Figure 1045. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/323223d2a3.svg.

(1.6.1.4.5.2.2.4.1.1.1) Figure 1046. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32393cecac.svg.

(1.6.1.4.5.2.2.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.1.2.1) Figure 1047. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32333e17237.svg.

(1.6.1.4.5.2.2.4.1.2.1) Figure 1048. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32359b2b4bc.svg.

(1.6.1.4.5.2.2.4.1.2.1) Figure 1049. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323c8356fe.svg.

(1.6.1.4.5.2.2.4.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.6.1.4.5.2.2.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.2.1.1) Figure 1050. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3233c0076a9.svg.

(1.6.1.4.5.2.2.4.2.1.1) Figure 1051. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32352dd1d7a.svg.

(1.6.1.4.5.2.2.4.2.1.1) Figure 1052. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3236bea33da.svg.

(1.6.1.4.5.2.2.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.6.1.4.5.2.2.4.2.2.1) Figure 1053. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323131470d3.svg.

(1.6.1.4.5.2.2.4.2.2.1) Figure 1054. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233a46db12.svg.

(1.6.1.4.5.2.2.4.2.2.1) Figure 1055. Abundance. Data grouped by visit,Drug.Before.Diet. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323336d5161.svg.

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